Age-specific transmission dynamics of SARS-CoV-2 during the first 2 years of the pandemic

Otilia Boldea, Amir Alipoor, Sen Pei, Jeffrey Shaman, Ganna Rozhnova

Research output: Contribution to journalArticleScientificpeer-review

Abstract

During its first 2 years, the SARS-CoV-2 pandemic manifested as multiple waves shaped by complex interactions between variants of concern, non-pharmaceutical interventions, and the immunological landscape of the population. Understanding how the age-specific epidemiology of SARS-CoV-2 has evolved throughout the pandemic is crucial for informing policy decisions. In this article, we aimed to develop an inference-based modeling approach to reconstruct the burden of true infections and hospital admissions in children, adolescents, and adults over the seven waves of four variants (wild-type, Alpha, Delta, and Omicron BA.1) during the first 2 years of the pandemic, using the Netherlands as the motivating example. We find that reported cases are a considerable underestimate and a generally poor predictor of true infection burden, especially because case reporting differs by age. The contribution of children and adolescents to total infection and hospitalization burden increased with successive variants and was largest during the Omicron BA.1 period. However, the ratio of hospitalizations to infections decreased with each subsequent variant in all age categories. Before the Delta period, almost all infections were primary infections occurring in naive individuals. During the Delta and Omicron BA.1 periods, primary infections were common in children but relatively rare in adults who experienced either reinfections or breakthrough infections. Our approach can be used to understand age-specific epidemiology through successive waves in other countries where random community surveys uncovering true SARS-CoV-2 dynamics are absent but basic surveillance and statistics data are available.
Original languageEnglish
Article numberpgae024
Number of pages14
JournalProceedings of the National Academy of Sciences Nexus
Volume3
Issue number2
Early online date1 Feb 2024
DOIs
Publication statusPublished - 1 Feb 2024

Keywords

  • COVID-19 and SARS-CoV-2
  • Age-specific transmission dynamics
  • Infection and hospitalization burdens
  • Inference
  • Mathematical model
  • Respiratory viruses
  • Filtering
  • Ensemble Kalman filter

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