Similarity-first search: A new algorithm with application to Robinsonian matrix recognition

Monique Laurent, Matteo Seminaroti

Research output: Contribution to journalArticleScientificpeer-review

5 Citations (Scopus)

Abstract

We present a new efficient combinatorial algorithm for recognizing if a given symmetric matrix is Robinsonian, i.e., if its rows and columns can be simultaneously reordered so that entries are monotone nondecreasing in rows and columns when moving toward the diagonal. As the main ingredient we introduce a new algorithm, named Similarity-First Search (SFS), which extends lexicographic breadth-first search (Lex-BFS) to weighted graphs and which we use in a multisweep algorithm to recognize Robinsonian matrices. Since Robinsonian binary matrices correspond to unit interval graphs, our algorithm can be seen as a generalization to weighted graphs of the 3-sweep Lex-BFS algorithm of Corneil for recognizing unit interval graphs. This new recognition algorithm is extremely simple and it exploits new insight on the combinatorial structure of Robinsonian matrices. For an $n\times n$ nonnegative matrix with $m$ nonzero entries, it terminates in $n-1$ SFS sweeps, with overall running time $O(n^2 +nm\log n)$.


Read More: http://epubs.siam.org/doi/abs/10.1137/16M1056791
Original languageEnglish
Pages (from-to)1765–1800
JournalSIAM Journal on Discrete Mathematics
Volume31
Issue number3
DOIs
Publication statusPublished - 2017

Keywords

  • Robinson (dis)similarity
  • seriation
  • similarity search
  • Lex-BFS
  • LBFS
  • partition refinement

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